Publications

For an up-to-date list of publications, see Google Scholar.
* and + denote joint authorship.


2024

  • A theory of brain-computer interface learning via low-dimensional control
    Menendez JA, Hennig JA, Golub MD, Oby ER, Sadtler PT, Batista AP, Chase SM, Yu BM, Latham PE
    bioRxiv (2024) link
  • Learning alters neural activity to simultaneously support memory and action
    Losey DM, Hennig JA+, Oby ER+, Golub MD, Sadtler PT, Quick KM, Ryu SI, Tyler-Kabara EC, Batista AP*, Yu BM*, Chase SM*
    Current Biology (2024) link pdf

    How do we learn new behaviors without disrupting previously learned ones? Using a brain-computer interface (BCI) paradigm, we found that learning a new task altered the neural activity used to perform familiar tasks. This "memory trace" did not interfere with the performance of familiar tasks, suggesting a possible mechanism for how we learn new behaviors without impacting previously learned ones.


  • The role of prospective contingency in the control of behavior and dopamine signals during associative learning
    Qian, L*, Burrell, M*, Hennig, JA, Matias, S, Murthy, VN, Gershman, SJ, & Uchida, N
    bioRxiv (2024) link

2023

  • Emergence of belief-like representations through reinforcement learning
    Hennig JA, Romero-Pinto SA, Yamaguchi T, Linderman SW, Uchida N, Gershman SJ
    PLOS Computational Biology (2023) link code pdf

    Animals are thought to predict rewards using reinforcement learning (RL). In environments with hidden states, animals may require "beliefs," or probabilistic estimates of the hidden states. We show that such belief-like representations emerge in recurrent neural networks (RNN) trained to perform RL in environments with hidden states.


2021

  • How learning unfolds in the brain: toward an optimization view
    Hennig JA, Oby ER, Losey DM, Batista AP*, Yu BM*, Chase SM*
    Neuron (2021) link pdf

    In this perspective, we consider the idea that learning in the brain can be described in terms of optimization, similar to learning in artificial neural networks (ANNs). We highlight three key features of how neural population changes with learning that differ from ANNs, suggesting refinements to this optimization view.


  • Learning is shaped by abrupt changes in neural engagement
    Hennig JA, Oby ER, Golub MD, Bahureksa LA, Sadtler PT, Quick KM, Ryu SI, Tyler-Kabara EC, Batista AP*, Chase SM*, Yu BM*
    Nature Neuroscience (2021) link code pdf

    We identified large fluctuations in neural population activity in motor cortex (M1) indicative of arousal-like internal state changes. These changes in neural activity helped to explain why animals learned some tasks more quickly than others.


2020

  • Intracortical Brain-Machine Interfaces
    Oby ER, Hennig JA, Batista AP*, Yu BM*, Chase SM*
    Neural Engineering, 3rd Edition (2020) link pdf

    A brain–machine interface (BMI) directly connects the brain to the external world, translating a user's internal motor commands into action. In this chapter, we discuss the four basic components of an intracortical BMI: an intracortical neural recording, a decoding algorithm, an output device, and sensory feedback.


2019

  • New neural activity patterns emerge with long-term learning
    Oby ER, Golub MD, Hennig JA, Degenhart AD, Tyler-Kabara EC, Yu BM*, Chase SM*, Batista AP*
    Proceedings of the National Academy of Sciences (2019) link pdf

    We establish that new neural activity patterns emerge with learning, providing evidence that the formation of new patterns of neural population activity can underlie the learning of new skills.


2018

  • Constraints on neural redundancy
    Hennig JA, Golub MD, Lund PJ, Sadtler PT, Oby ER, Quick KM, Ryu SI, Tyler-Kabara EC, Batista AP*, Yu BM*, Chase SM*
    eLife (2018) link code pdf

    Millions of neurons in the brain control the activity of tens of muscles in the arm, meaning neural activity is redundant. We compared various hypotheses for how the brain deals with this redundancy by recording in primary motor cortex while subjects performed a brain-computer interface task.


2017

  • A classifying variational autoencoder with application to polyphonic music generation
    Hennig JA, Umakantha A, Williamson RC
    arXiv (2017) link code pdf

    We augment a neural network known as a variational autoencoder (VAE) to classify the observed data while also learning its latent representation. We show that when this network is combined with an LSTM and used to generate music, the network plays fewer incorrect notes than a standard VAE+LSTM.


2015

  • A distinct mechanism of temporal integration for motion through depth
    Katz LN, Hennig JA, Cormack LK, Huk AC
    Journal of Neuroscience (2015) link pdf

    We compare the time-varying improvements in sensitivity during motion discrimination tasks in 2D and 3D, and find that the two are remarkably similar, however with a lower signal-to-noise ratio in 3D.


2013

  • Signal multiplexing and single-neuron computations in lateral intraparietal area during decision-making
    Meister MLR, Hennig JA, Huk AC
    Journal of Neuroscience (2013) link pdf

    We show that cells in the lateral intraparietal area (LIP) have firing activity that simultaneously carries decision signals and decision-irrelevant sensory signals. We conclude that LIP cells show a broader range of response motifs than previously considered.